parsnp

downloads

Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection.

Home https://github.com/marbl/parsnp
Versions 1.2
License custom; see https://raw.githubusercontent.com/marbl/parsnp/master/LICENSE
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/parsnp

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install parsnp

and update with:

conda update parsnp

docker

A Docker container is available at https://quay.io/repository/biocontainers/parsnp.