recipe parsnp

Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection.

Homepage:

https://github.com/marbl/parsnp

License:

custom; see https://raw.githubusercontent.com/marbl/parsnp/master/LICENSE

Recipe:

/parsnp/meta.yaml

package parsnp

Versions:

1.7.4-2,  1.7.4-1,  1.7.4-0,  1.7.3-0,  1.7.2-0,  1.7.1-1,  1.7.1-0,  1.7.0-0,  1.6.2-1, 

1.7.4-2,  1.7.4-1,  1.7.4-0,  1.7.3-0,  1.7.2-0,  1.7.1-1,  1.7.1-0,  1.7.0-0,  1.6.2-1,  1.6.2-0,  1.6.1-1,  1.6.1-0,  1.6.0-0,  1.5.6-1,  1.5.6-0,  1.5.4-1,  1.5.4-0,  1.5.3-0,  1.5.2-1,  1.5.2-0,  1.5.1-0,  1.5.0-4,  1.5.0-3,  1.5.0-2,  1.5.0-1,  1.5.0-0,  1.2-0

Depends:

• biopython

• fastani

• fasttree

• harvesttools

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• mafft

• mash

• numpy

• openmp

• phipack

• python >=3.7

• raxml

• zlib

Required By:

• harvest-variants

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install parsnp

and update with:

conda update parsnp

or use the docker container:

docker pull quay.io/biocontainers/parsnp:<tag>

(see parsnp/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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