recipe pathoscope

Species identification and strain attribution with unassembled sequencing data

Homepage

https://github.com/PathoScope/PathoScope

License

GPLv3

Recipe

/pathoscope/meta.yaml

package pathoscope

(downloads) docker_pathoscope

Versions

2.0.7-0, 2.0.6-1, 2.0.6-0

Depends bowtie2

Depends python

>=2.7,<2.8.0a0

Depends samtools

<1.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pathoscope

and update with:

conda update pathoscope

or use the docker container:

docker pull quay.io/biocontainers/pathoscope:<tag>

(see pathoscope/tags for valid values for <tag>)