recipe pb-falcon

FALCON/Unzip tool-suite (originally by Jason Chin)

Homepage:

https://github.com/PacificBiosciences/pbbioconda

License:

BSD 3-Clause Clear License

Recipe:

/pb-falcon/meta.yaml

package pb-falcon

versions:

2.2.4-7,  2.2.4-6,  2.2.4-5,  2.2.4-4,  2.2.4-3,  2.2.4-2,  2.2.4-1,  2.2.4-0,  2.2.3-0, 

2.2.4-7,  2.2.4-6,  2.2.4-5,  2.2.4-4,  2.2.4-3,  2.2.4-2,  2.2.4-1,  2.2.4-0,  2.2.3-0,  2.2.2-0,  2.2.1-0,  2.2.0-1,  2.2.0-0,  0.3.4-0,  0.3.3-0,  0.3.2-0,  0.3.1-0,  0.3.0-1,  0.3.0-0,  0.2.7-1,  0.2.6-3,  0.2.6-2,  0.2.6-1,  0.2.5-3,  0.2.5-2,  0.2.5-1,  0.2.4-0,  0.2.3-0,  0.2.2-0,  0.2.1-1,  0.2.1-0,  0.2.0-2,  0.2.0-0,  0.0.2-0,  0.0.1-0,  0.0.0-0

depends future:

>=0.16.0

depends htslib:

>=1.21,<1.22.0a0

depends libgcc:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends networkx:

>=1.9.1

depends numpy:

depends pysam:

depends python:

>=3.10,<3.11.0a0

depends python-edlib:

>=1.2.4

depends python-intervaltree:

depends python-msgpack:

>=0.6.1

depends python_abi:

3.10.* *_cp310

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pb-falcon

and update with::

   mamba update pb-falcon

To create a new environment, run:

mamba create --name myenvname pb-falcon

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pb-falcon:<tag>

(see `pb-falcon/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pb-falcon/README.html)