recipe pbipa

Improved Phased Assembly

Homepage:

https://github.com/PacificBiosciences/pbbioconda

License:

BSD 3-Clause Clear License

Recipe:

/pbipa/meta.yaml

package pbipa

versions:

1.8.0-2,  1.8.0-1,  1.8.0-0,  1.5.0-3,  1.5.0-2,  1.5.0-1,  1.5.0-0,  1.3.2-0,  1.3.1-0, 

1.8.0-2,  1.8.0-1,  1.8.0-0,  1.5.0-3,  1.5.0-2,  1.5.0-1,  1.5.0-0,  1.3.2-0,  1.3.1-0,  1.3.0-1,  1.3.0-0,  1.2.0-2,  1.2.0-1,  1.2.0-0,  1.1.2-0,  1.0.5-0,  1.0.3-0,  0.0.1-0

depends htslib:

>=1.17,<1.21.0a0

depends libgcc-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends minimap2:

depends networkx:

depends pb-falconc:

>=1.15

depends pcre:

>=8.45,<9.0a0

depends racon:

depends samtools:

>=1.15

depends snakemake-minimal:

>=7.0.4

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pbipa

and update with::

   mamba update pbipa

To create a new environment, run:

mamba create --name myenvname pbipa

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pbipa:<tag>

(see `pbipa/tags`_ for valid values for ``<tag>``)

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