recipe perl-biox-workflow-command

Opinionated Bioinformatics Genomics Workflow Creator

Homepage:

https://github.com/biosails/BioX-Workflow-Command

License:

perl_5

Recipe:

/perl-biox-workflow-command/meta.yaml

package perl-biox-workflow-command

versions:

2.4.1-1,  2.4.1-0,  2.3.2-0,  2.3.0-0,  2.2.3-0,  2.2.1-0

depends perl:

>=5.26.2,<5.26.3.0a0

depends perl-algorithm-dependency:

depends perl-app-cpanminus:

depends perl-biosails:

depends perl-class-load:

depends perl-clone:

depends perl-config-any:

depends perl-data-walk:

depends perl-datetime:

depends perl-datetime-format-strptime:

depends perl-dbm-deep:

depends perl-escape-houdini:

depends perl-file-details:

depends perl-file-find-rule:

depends perl-file-path:

depends perl-file-slurp:

depends perl-git-wrapper:

depends perl-git-wrapper-plus:

depends perl-hash-merge:

depends perl-io-interactive:

depends perl-json:

depends perl-list-compare:

depends perl-list-moreutils:

>=0.428

depends perl-list-someutils:

depends perl-list-uniq:

depends perl-log-log4perl:

depends perl-mce-shared:

depends perl-moose:

depends perl-moosex-app:

1.39

depends perl-moosex-app-role-log4perl:

depends perl-moosex-getopt:

depends perl-moosex-types:

depends perl-moosex-types-path-tiny:

depends perl-namespace-autoclean:

depends perl-params-validate:

depends perl-path-tiny:

depends perl-safe:

depends perl-string-approx:

depends perl-test2:

depends perl-text-asciitable:

depends perl-text-template:

depends perl-try-tiny:

depends perl-yaml:

depends perl-yaml-libyaml:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install perl-biox-workflow-command

and update with::

   mamba update perl-biox-workflow-command

To create a new environment, run:

mamba create --name myenvname perl-biox-workflow-command

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/perl-biox-workflow-command:<tag>

(see `perl-biox-workflow-command/tags`_ for valid values for ``<tag>``)

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