recipe perl-fastx-reader

FASTX::Reader, Perl module to parse FASTA and FASTQ files

Homepage:

https://metacpan.org/release/FASTX-Reader

Developer docs:

https://github.com/telatin/FASTQ-Parser

License:

gpl_3

Recipe:

/perl-fastx-reader/meta.yaml

A perl module to parser FASTQ and FASTA files, gzipped or not, supporting Illumina naming scheme and paired end files

package perl-fastx-reader

(downloads) docker_perl-fastx-reader

versions:
1.12.0-0,  1.11.0-0,  1.10.0-0,  1.9.0-0,  1.8.1-0,  1.7.0-0,  1.6.1-0,  1.6.0-0,  1.5.0-0, 

1.12.0-0,  1.11.0-0,  1.10.0-0,  1.9.0-0,  1.8.1-0,  1.7.0-0,  1.6.1-0,  1.6.0-0,  1.5.0-0,  1.4.1-0,  1.3.0-1,  1.3.0-0,  1.2.1-0,  1.1.0-0,  1.0.5-0,  1.0.4-0,  1.0.2-1,  1.0.2-0,  1.0.1-0,  1.0.0-0,  0.92-1,  0.92-0,  0.90-0,  0.88-0,  0.87-0,  0.61-0,  0.60-0

depends perl:

>=5.32.1,<6.0a0 *_perl5

depends perl-capture-tiny:

depends perl-carp:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install perl-fastx-reader

and update with::

   mamba update perl-fastx-reader

To create a new environment, run:

mamba create --name myenvname perl-fastx-reader

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/perl-fastx-reader:<tag>

(see `perl-fastx-reader/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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