- recipe perl-obogaf-parser
a perl5 module to handle obo and gaf file
- Developer docs:
obogaf-parser is a perl5 module specifically designed to handle GO and HPO obo file and their gene annotation file (gaf). However, obogaf-parser can be safely used to parse any obo file listed in OBO foundry website and any gaf file structured as those shown in GOA and HPO website (i.e. a csv file using tab as separator).
- package perl-obogaf-parser¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install perl-obogaf-parser and update with:: mamba update perl-obogaf-parser
To create a new environment, run:
mamba create --name myenvname perl-obogaf-parser
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/perl-obogaf-parser:<tag> (see `perl-obogaf-parser/tags`_ for valid values for ``<tag>``)