recipe perl-obogaf-parser

a perl5 module to handle obo and gaf file

Homepage:

http://metacpan.org/pod/obogaf::parser

Documentation:

https://obogaf-parser.readthedocs.io

Developer docs:

https://github.com/marconotaro/obogaf-parser

License:

perl_5

Recipe:

/perl-obogaf-parser/meta.yaml

[](https://obogaf-parser.readthedocs.io/en/latest/?badge=latest)

obogaf-parser is a perl5 module specifically designed to handle GO and HPO obo file and their gene annotation file (gaf). However, obogaf-parser can be safely used to parse any obo file listed in OBO foundry website and any gaf file structured as those shown in GOA and HPO website (i.e. a csv file using tab as separator).

package perl-obogaf-parser

Versions:

1.373-2,  1.373-1,  1.373-0,  1.272-0,  1.271-0,  1.016-0

Depends:

• perl >=5.32.1,<6.0a0 *_perl5

• perl-graph

• perl-list-moreutils

• perl-perlio-gzip

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install perl-obogaf-parser

and update with:

conda update perl-obogaf-parser

or use the docker container:

docker pull quay.io/biocontainers/perl-obogaf-parser:<tag>

(see perl-obogaf-parser/tags for valid values for <tag>)

Download stats

Link to this page

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