recipe perl-sanger-cgp-allelecount

Support code for NGS copy number algorithm

Homepage:

https://github.com/cancerit/alleleCount

License:

GPLv3

Recipe:

/perl-sanger-cgp-allelecount/meta.yaml

package perl-sanger-cgp-allelecount

Versions:

4.3.0-1,  4.3.0-0,  4.2.1-1,  4.2.1-0,  4.1.0-0,  4.0.0-2,  4.0.0-1,  4.0.0-0,  2.1.2-3, 

4.3.0-1,  4.3.0-0,  4.2.1-1,  4.2.1-0,  4.1.0-0,  4.0.0-2,  4.0.0-1,  4.0.0-0,  2.1.2-3,  2.1.2-2,  2.1.2-1

Depends:

• libgcc-ng >=12

• perl >=5.32.1,<5.33.0a0 *_perl5

• perl-bio-samtools

• perl-bioperl

• perl-file-slurp 9999.32.*

• perl-file-which

• perl-module-build 0.4234.*

• perl-pod-coverage

• perl-sanger-cgp-vcf

Required By:

• perl-sanger-cgp-battenberg

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install perl-sanger-cgp-allelecount

and update with:

conda update perl-sanger-cgp-allelecount

or use the docker container:

docker pull quay.io/biocontainers/perl-sanger-cgp-allelecount:<tag>

(see perl-sanger-cgp-allelecount/tags for valid values for <tag>)

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