- recipe phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages.
Phigaro is a standalone command-line application that is able to detect prophage regions taking raw genome and metagenome assemblies as an input. It also produces dynamic annotated “prophage genome maps” and marks possible transposon insertion spots inside prophages. It is applicable for mining prophage regions from large metagenomic datasets.
- package phigaro¶
- Required By:
With an activated Bioconda channel (see set-up-channels), install with:
conda install phigaro
and update with:
conda update phigaro
or use the docker container:
docker pull quay.io/biocontainers/phigaro:<tag>
(see phigaro/tags for valid values for