recipe picrust2

PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States

Homepage:

https://github.com/picrust/picrust2

License:

GNU General Public License v3.0

Recipe:

/picrust2/meta.yaml

package picrust2

versions:

2.5.3-0,  2.5.2-0,  2.5.1-0,  2.5.0-0,  2.4.2-0,  2.4.1-0,  2.4.0-0,  2.3.0_b-0,  2.2.0_b-0, 

2.5.3-0,  2.5.2-0,  2.5.1-0,  2.5.0-0,  2.4.2-0,  2.4.1-0,  2.4.0-0,  2.3.0_b-0,  2.2.0_b-0,  2.1.4_b-0,  2.1.3_b-0,  2.1.2_b-0,  2.1.1_b-0,  2.1.0_b-0,  2.0.3_b-0

depends biom-format:

>=2.1.10

depends dendropy:

4.5.2.*

depends epa-ng:

0.3.8.*

depends gappa:

>=0.8.0,<=0.8.5

depends glpk:

>=4.65

depends h5py:

>=2.10.0

depends hmmer:

>=3.1b2,<=3.2.1

depends jinja2:

>=2.11.3

depends joblib:

>=1.0.1

depends numpy:

>=1.19.5

depends pandas:

>=1.1.5

depends pytest:

>=4.4.1

depends pytest-cov:

>=2.6.1

depends python:

>=3.5

depends r-base:

>=3.5.1

depends r-castor:

>=1.7.2

depends scipy:

>=1.2.1

depends sepp:

4.4.0.*

depends wget:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install picrust2

and update with::

   mamba update picrust2

To create a new environment, run:

mamba create --name myenvname picrust2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/picrust2:<tag>

(see `picrust2/tags`_ for valid values for ``<tag>``)

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