recipe pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data

Homepage

http://gmt.genome.wustl.edu/packages/pindel/index.html

License

GPLv3

Recipe

/pindel/meta.yaml

Links

biotools: pindel

package pindel

(downloads) docker_pindel

Versions

0.2.5b9-50.2.5b9-40.2.5b9-30.2.5b9-20.2.5b9-10.2.5b9-00.2.5b8-2

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pindel

and update with:

conda update pindel

or use the docker container:

docker pull quay.io/biocontainers/pindel:<tag>

(see pindel/tags for valid values for <tag>)