recipe pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data

Homepage:

http://gmt.genome.wustl.edu/packages/pindel/index.html

License:

GPLv3

Recipe:

/pindel/meta.yaml

Links:

biotools: pindel

package pindel

Versions:

0.2.5b9-8,  0.2.5b9-7,  0.2.5b9-6,  0.2.5b9-5,  0.2.5b9-4,  0.2.5b9-3,  0.2.5b9-2,  0.2.5b9-1,  0.2.5b9-0, 

0.2.5b9-8,  0.2.5b9-7,  0.2.5b9-6,  0.2.5b9-5,  0.2.5b9-4,  0.2.5b9-3,  0.2.5b9-2,  0.2.5b9-1,  0.2.5b9-0,  0.2.5b8-2

Depends:

• htslib >=1.16,<1.17.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pindel

and update with:

conda update pindel

or use the docker container:

docker pull quay.io/biocontainers/pindel:<tag>

(see pindel/tags for valid values for <tag>)

Download stats

Link to this page

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