recipe pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data

Homepage

http://gmt.genome.wustl.edu/packages/pindel/index.html

License

GPLv3

Recipe

/pindel/meta.yaml

Links

biotools: pindel

package pindel

Versions

0.2.5b9-5,  0.2.5b9-4,  0.2.5b9-3,  0.2.5b9-2,  0.2.5b9-1,  0.2.5b9-0,  0.2.5b8-2

Depends

• htslib >=1.12,<1.13.0a0

• libgcc-ng >=9.3.0

• libstdcxx-ng >=9.3.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pindel

and update with:

conda update pindel

or use the docker container:

docker pull quay.io/biocontainers/pindel:<tag>

(see pindel/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pindel/README.html)