recipe plant_tribes_assembly_post_processor

Transcriptome assembly post processing pipeline

Homepage:

https://github.com/dePamphilis/PlantTribes

License:

GNU General Public License v3 (GPLv3)

Recipe:

/plant_tribes_assembly_post_processor/meta.yaml

package plant_tribes_assembly_post_processor

versions:

1.0.4-1,  1.0.4-0,  1.0.3-1,  1.0.3-0,  1.0.2-1,  1.0.2-0,  1.0.1-1,  1.0.1-0,  1.0.0-1, 

1.0.4-1,  1.0.4-0,  1.0.3-1,  1.0.3-0,  1.0.2-1,  1.0.2-0,  1.0.1-1,  1.0.1-0,  1.0.0-1,  1.0.0-0

depends cap3:

depends genometools-genometools:

>=1,<2

depends hmmer:

>=3

depends mafft:

>=7,<8

depends perl:

>=5.22

depends perl-estscan2:

depends transdecoder:

>=5,<6

depends trimal:

>=1.4,<2

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install plant_tribes_assembly_post_processor

and update with::

   mamba update plant_tribes_assembly_post_processor

To create a new environment, run:

mamba create --name myenvname plant_tribes_assembly_post_processor

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/plant_tribes_assembly_post_processor:<tag>

(see `plant_tribes_assembly_post_processor/tags`_ for valid values for ``<tag>``)

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