- recipe plastid
plastid is a Python library for genomic analysis -- in particular, high-throughput sequencing data
- Homepage:
- License:
BSD 3-Clause
- Recipe:
- package plastid¶
- versions:
0.6.1-2,0.6.1-1,0.6.1-0,0.5.1-4,0.5.1-3,0.5.1-2,0.5.1-1,0.5.1-0,0.4.8-5,0.6.1-2,0.6.1-1,0.6.1-0,0.5.1-4,0.5.1-3,0.5.1-2,0.5.1-1,0.5.1-0,0.4.8-5,0.4.8-4,0.4.8-1,0.4.8-0,0.4.7-1,0.4.7-0- depends biopython:
>=1.64,<1.78- depends bowtie:
- depends cython:
>=0.22.0- depends fastx_toolkit:
- depends htslib:
>=1.17,<1.22.0a0- depends libgcc-ng:
>=12- depends libzlib:
>=1.2.13,<1.3.0a0- depends matplotlib-base:
>=1.4.0- depends numpy:
<=1.23.5- depends numpy:
>=1.23.5,<2.0a0- depends openssl:
>=3.1.1,<4.0a0- depends pandas:
>=0.17.0- depends pysam:
>=0.21.0,<0.21.1.0a0- depends python:
>=3.8,<3.9.0a0- depends python_abi:
3.8.* *_cp38- depends scipy:
>=0.15.1- depends setuptools:
- depends termcolor:
- depends twobitreader:
>=3.0.0- depends zlib:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install plastid and update with:: mamba update plastid
To create a new environment, run:
mamba create --name myenvname plastid
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/plastid:<tag> (see `plastid/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/plastid/README.html)
