recipe platypus-variant

A Haplotype-Based Variant Caller For Next Generation Sequence Data

Homepage

http://www.well.ox.ac.uk/platypus

License

GPLv3

Recipe

/platypus-variant/meta.yaml

package platypus-variant

(downloads) docker_platypus-variant

Versions

0.8.1.2-0, 0.8.1.1-3, 0.8.1.1-2, 0.8.1.1-1, 0.8.1.1-0, 0.8.1-1, 0.8.1-0

Depends htslib

>=1.9,<1.10.0a0

Depends libgcc-ng

>=7.3.0

Depends python

>=2.7,<2.8.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install platypus-variant

and update with:

conda update platypus-variant

or use the docker container:

docker pull quay.io/biocontainers/platypus-variant:<tag>

(see platypus-variant/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/platypus-variant/README.html)