recipe pomoxis

Assembly, consensensus, and analysis tools by ONT research

Homepage

https://github.com/nanoporetech/pomoxis

Documentation

https://nanoporetech.github.io/pomoxis/index.html

License

OTHER / Mozilla Public License 2.0

Recipe

/pomoxis/meta.yaml

package pomoxis

(downloads) docker_pomoxis

Versions

0.2.2-0

Depends aiozmq

Depends bcftools

Depends biopython

>=1.63

Depends cffi

Depends fast5-research

Depends intervaltree

>=3

Depends mappy

Depends matplotlib

Depends miniasm

Depends minimap2

Depends msgpack-python

Depends numpy

Depends pandas

Depends porechop

Depends pysam

Depends python

>=3.4,<3.7

Depends racon

Depends samtools

Depends scrappie

Depends seqkit

Depends watchdog

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pomoxis

and update with:

conda update pomoxis

or use the docker container:

docker pull quay.io/biocontainers/pomoxis:<tag>

(see pomoxis/tags for valid values for <tag>)