recipe pore-c

Toolkit for processing Pore-C concatemers

Homepage:

https://github.com/nanoporetech/pore-c

License:

OTHER / Mozilla Public License 2.0

Recipe:

/pore-c/meta.yaml

package pore-c

versions:

0.4.0-0,  0.3.0-0

depends biopython:

1.77

depends click:

>=7.0.0,<8.0

depends cooler:

0.8.*,>=0.8.5

depends dask:

2.*,>=2.0.0

depends distributed:

2.*,>=2.9.3

depends intake:

depends intake-parquet:

depends ncls:

depends networkx:

2.*,>=2.4.0

depends numpy:

<1.20.0

depends pairtools:

depends pandas:

>=1.0.5

depends pyarrow:

1.*,>=1.0.0

depends pydantic:

1.6.1

depends pyranges:

0.0.71

depends pysam:

depends python:

depends streamz:

0.*,>=0.5.2

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pore-c

and update with::

   mamba update pore-c

To create a new environment, run:

mamba create --name myenvname pore-c

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pore-c:<tag>

(see `pore-c/tags`_ for valid values for ``<tag>``)

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