recipe pplacer

Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment.

Homepage:

http://matsen.fredhutch.org/pplacer/

Developer docs:

https://github.com/matsen/pplacer/

License:

GPL / GPL-3.0

Recipe:

/pplacer/meta.yaml

package pplacer

Versions:

1.1.alpha19-2,  1.1.alpha19-1,  1.1.alpha19-0,  1.1.alpha17-0

Required By:

• metabinner

• eukcc

• checkm-genome

• metawrap-mg

• singlem

• graftm

• gtdbtk

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pplacer

and update with:

conda update pplacer

or use the docker container:

docker pull quay.io/biocontainers/pplacer:<tag>

(see pplacer/tags for valid values for <tag>)

Download stats

Link to this page

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