recipe prank

PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences.

Homepage:

http://wasabiapp.org/software/prank

Documentation:

https://ariloytynoja.github.io/prank-msa

Developer docs:

https://github.com/ariloytynoja/prank-msa

License:

GPL3 / GPL-3.0-or-later

Recipe:

/prank/meta.yaml

Links:

biotools: prank, doi: 10.1007/978-1-62703-646-7_10

package prank

(downloads) docker_prank

versions:
170427-1,  170427-0,  v.170427-7,  v.170427-6,  v.170427-5,  v.170427-4,  v.170427-3,  v.170427-2,  v.170427-1, 

170427-1,  170427-0,  v.170427-7,  v.170427-6,  v.170427-5,  v.170427-4,  v.170427-3,  v.170427-2,  v.170427-1,  v.170427-0,  v.150803-0

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install prank

and update with::

   mamba update prank

To create a new environment, run:

mamba create --name myenvname prank

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/prank:<tag>

(see `prank/tags`_ for valid values for ``<tag>``)

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Link to this page

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