recipe prophyle

ProPhyle is an accurate, resource-frugal and deterministic phylogeny-based metagenomic classifier.

Homepage:

https://github.com/karel-brinda/prophyle

License:

MIT

Recipe:

/prophyle/meta.yaml

package prophyle

versions:

0.3.3.2-2,  0.3.3.2-1,  0.3.3.2-0,  0.3.3.1-0,  0.3.2.0-2,  0.3.2.0-1,  0.3.2.0-0,  0.3.1.0-7,  0.3.1.0-6, 

0.3.3.2-2,  0.3.3.2-1,  0.3.3.2-0,  0.3.3.1-0,  0.3.2.0-2,  0.3.2.0-1,  0.3.2.0-0,  0.3.1.0-7,  0.3.1.0-6,  0.3.1.0-5,  0.3.1.0-4,  0.3.1.0-3,  0.3.1.0-2,  0.3.1.0-1,  0.3.0.3-3,  0.3.0.3-2,  0.3.0.3-1,  0.3.0.2-1,  0.3.0.0-1,  0.2.1.3-2,  0.2.1.3-1,  0.2.1.3-0,  0.2.1.2-1,  0.2.1.0-1,  0.2.1.0-0,  0.2.0.3-2,  0.2.0.3-1,  0.2.0.3-0,  0.2.0.2-0,  0.2.0-0,  0.1.0.38-2,  0.1.0.38-1,  0.1.0.38-0,  0.1.0.35-0,  0.1.0.29-0

depends bitarray:

depends ete3:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends psutil:

depends pysam:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends samtools:

>=1.20,<2.0a0

depends scipy:

depends wheel:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install prophyle

and update with::

   mamba update prophyle

To create a new environment, run:

mamba create --name myenvname prophyle

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/prophyle:<tag>

(see `prophyle/tags`_ for valid values for ``<tag>``)

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