recipe proteinortho

Proteinortho is a tool to detect orthologous genes within different species.

Homepage:

https://gitlab.com/paulklemm_PHD/proteinortho

Documentation:

https://gitlab.com/paulklemm_PHD/proteinortho/-/blob/master/README.md

License:

GPL / GPL-3.0-only

Recipe:

/proteinortho/meta.yaml

Links:

biotools: proteinortho, doi: 10.3389/fbinf.2023.1322477, usegalaxy-eu: proteinortho, usegalaxy-eu: proteinortho_summary, usegalaxy-eu: proteinortho_grab_proteins

package proteinortho

versions:

6.3.3-0,  6.3.2-0,  6.3.1-0,  6.3.0-0,  6.2.3-1,  6.2.3-0,  6.2.2-0,  6.2.1-0,  6.2.0-0, 

6.3.3-0,  6.3.2-0,  6.3.1-0,  6.3.0-0,  6.2.3-1,  6.2.3-0,  6.2.2-0,  6.2.1-0,  6.2.0-0,  6.1.7-0,  6.1.6-0,  6.1.5-0,  6.1.4-0,  6.1.3-0,  6.1.2-0,  6.1.1-1,  6.1.1-0,  6.1.0-2,  6.1.0-1,  6.1.0-0,  6.0.35-0,  6.0.34-0,  6.0.33-1,  6.0.33-0,  6.0.32-0,  6.0.31-0,  6.0.30-0,  6.0.29-1,  6.0.29-0,  6.0.28-1,  6.0.28-0,  6.0.27-0,  6.0.26-0,  6.0.25-0,  6.0.24-0,  6.0.23-0,  6.0.22-0,  6.0.21-0,  6.0.20-0,  6.0.19-0,  6.0.18-1,  6.0.18-0,  6.0.17-0,  6.0.16-1,  6.0.16-0,  6.0.15-0,  6.0.14-0,  6.0.13-0,  6.0.12-0,  6.0.11-0,  6.0.10-0,  6.0.9-0,  6.0.8-0,  6.0.7-0,  6.0.6-0,  6.0.5-0,  6.0.4-0,  6.0.3-0,  6.0.2c-0,  6.0.1-0,  6.0-0,  6.0b-0

depends _openmp_mutex:

>=4.5

depends blis:

depends diamond:

>=0.9.29

depends libgcc:

>=12

depends libgfortran:

depends libgfortran5:

>=12.4.0

depends libgomp:

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx:

>=12

depends perl:

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install proteinortho

and update with::

   mamba update proteinortho

To create a new environment, run:

mamba create --name myenvname proteinortho

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/proteinortho:<tag>

(see `proteinortho/tags`_ for valid values for ``<tag>``)

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