recipe pyfastaq

Script to manipulate FASTA and FASTQ files, plus API for developers

Homepage:

https://github.com/sanger-pathogens/Fastaq

License:

GPL / GNU General Public License v3 (GPLv3)

Recipe:

/pyfastaq/meta.yaml

package pyfastaq

Versions:

3.17.0-2,  3.17.0-1,  3.17.0-0,  3.14.0-0,  3.11.0-1,  3.11.0-0

Depends:

• python >=3

Required By:

• plasmidtron

• tiptoft

• galru

• albatradis

• bio_assembly_refinement

• seroba

• varifier

• saffrontree

• krocus

• cluster_vcf_records

• pymummer

• circlator

• ariba

• iva

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pyfastaq

and update with:

conda update pyfastaq

or use the docker container:

docker pull quay.io/biocontainers/pyfastaq:<tag>

(see pyfastaq/tags for valid values for <tag>)

Download stats

Link to this page

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