recipe pyfastaq

Script to manipulate FASTA and FASTQ files, plus API for developers

Homepage

https://github.com/sanger-pathogens/Fastaq

License

GPL / GNU General Public License v3 (GPLv3)

Recipe

/pyfastaq/meta.yaml

package pyfastaq

Versions

3.17.0-2,  3.17.0-1,  3.17.0-0,  3.14.0-0,  3.11.0-1,  3.11.0-0

Depends

• python >=3

Required By

• saffrontree

• albatradis

• tiptoft

• circlator

• plasmidtron

• galru

• iva

• pymummer

• seroba

• varifier

• krocus

• bio_assembly_refinement

• cluster_vcf_records

• ariba

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pyfastaq

and update with:

conda update pyfastaq

or use the docker container:

docker pull quay.io/biocontainers/pyfastaq:<tag>

(see pyfastaq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pyfastaq/README.html)