recipe pyloh

Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity

Homepage:

https://github.com/uci-cbcl/PyLOH

License:

GPLv2

Recipe:

/pyloh/meta.yaml

package pyloh

versions:

1.4.3-2,  1.4.3-1,  1.4.3-0,  1.4.1-1

depends matplotlib:

>=1.2

depends numpy:

>=1.6.1

depends pysam:

>=0.7

depends python:

<3

depends scipy:

>=0.10

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pyloh

and update with::

   mamba update pyloh

To create a new environment, run:

mamba create --name myenvname pyloh

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pyloh:<tag>

(see `pyloh/tags`_ for valid values for ``<tag>``)

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