recipe pynteny

Multiple HMM - search via synteny structures in Python

Homepage:

http://github.com/robaina/Pynteny

Documentation:

https://robaina.github.io/Pynteny/

License:

Apache-2.0 license

Recipe:

/pynteny/meta.yaml

Links:

DOI: 10.5281/zenodo.7082448

Multiple HMM - search via synteny structures in Python

package pynteny

versions:

1.0.0-0,  0.0.5-0

depends biopython:

depends hmmer:

depends libgcc-ng:

>=12

depends numpy:

depends pandas:

depends prodigal:

depends psutil:

depends pyfastx:

>=0.8

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends requests:

depends seqkit:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pynteny

and update with::

   mamba update pynteny

To create a new environment, run:

mamba create --name myenvname pynteny

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pynteny:<tag>

(see `pynteny/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pynteny/README.html)