recipe pyroe

A python toolkit to aid with scRNA-seq analysis workflows using alevin-fry

Homepage:

https://github.com/COMBINE-lab/pyroe

License:

BSD-3-Clause

Recipe:

/pyroe/meta.yaml

package pyroe

versions:

0.9.3-0,  0.9.2-1,  0.9.2-0,  0.9.1-1,  0.9.1-0,  0.9.0-0,  0.8.1-0,  0.8.0-0,  0.7.1-0, 

0.9.3-0,  0.9.2-1,  0.9.2-0,  0.9.1-1,  0.9.1-0,  0.9.0-0,  0.8.1-0,  0.8.0-0,  0.7.1-0,  0.7.0-0,  0.6.4-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.0-0,  0.4.0-0,  0.3.0-0,  0.2.0-0

depends bedtools:

>=2.30.0

depends biopython:

>=1.77

depends numpy:

1.23

depends packaging:

>=21.0

depends pandas:

>=1.3.0,<2.0.0

depends pyranges:

0.0.120

depends python:

>=3.7

depends scanpy:

>=1.8.2

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pyroe

and update with::

   mamba update pyroe

To create a new environment, run:

mamba create --name myenvname pyroe

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pyroe:<tag>

(see `pyroe/tags`_ for valid values for ``<tag>``)

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