recipe pysamstats

Calculate read mapping stats from SAM/BAM/CRAM

Homepage:

https://github.com/alimanfoo/pysamstats

License:

MIT

Recipe:

/pysamstats/meta.yaml

Links:

biotools: pysamstats

package pysamstats

Versions:

1.1.2-10,  1.1.2-9,  1.1.2-8,  1.1.2-7,  1.1.2-6,  1.1.2-5,  1.1.2-4,  1.1.2-3,  1.1.2-2, 

1.1.2-10,  1.1.2-9,  1.1.2-8,  1.1.2-7,  1.1.2-6,  1.1.2-5,  1.1.2-4,  1.1.2-3,  1.1.2-2,  1.1.2-1,  1.1.2-0,  1.0.1-2,  1.0.1-1,  1.0.1-0,  1.0.0-0,  0.24.3-0,  0.24.2-1,  0.24.0-0

Depends:

• libgcc-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• numpy

• pysam >=0.21.0,<0.21.1.0a0

• pytables

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• zlib

Required By:

• ribominer

• strainflye

• smallgenomeutilities

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pysamstats

and update with:

conda update pysamstats

or use the docker container:

docker pull quay.io/biocontainers/pysamstats:<tag>

(see pysamstats/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pysamstats/README.html)