- recipe r-bcbiornaseq
R package for bcbio RNA-seq analysis.
- Homepage:
- Developer docs:
- License:
GPL / AGPL-3.0
- Recipe:
- package r-bcbiornaseq¶
-
- Versions:
0.5.4-1
,0.5.4-0
,0.5.3-1
,0.5.3-0
,0.5.2-0
,0.5.1-1
,0.5.1-0
,0.4.0-0
,0.3.44-0
,0.5.4-1
,0.5.4-0
,0.5.3-1
,0.5.3-0
,0.5.2-0
,0.5.1-1
,0.5.1-0
,0.4.0-0
,0.3.44-0
,0.3.42-0
,0.3.41-0
,0.3.40-1
,0.3.40-0
,0.3.39-0
,0.3.37-0
,0.3.36-0
,0.3.34-0
,0.3.33-1
,0.3.33-0
,0.3.32-0
,0.3.31-0
,0.3.30-0
,0.3.29-0
,0.3.28-0
,0.3.27-0
,0.3.26-0
,0.2.9-0
,0.2.8-0
,0.2.7-0
,0.2.4-0
,0.2.4a-0
,0.2.3a-0
,0.1.2-0
- Depends:
bioconductor-biocgenerics
>=0.44.0
bioconductor-biocstyle
>=2.26.0
bioconductor-clusterprofiler
>=4.6.0
bioconductor-degreport
>=1.34.0
bioconductor-deseq2
>=1.38.0
bioconductor-dose
>=3.24.0
bioconductor-edger
>=3.40.0
bioconductor-enrichplot
>=1.18.0
bioconductor-ensdb.hsapiens.v75
>=2.99.0
bioconductor-genomeinfodb
>=1.34.0
bioconductor-iranges
>=2.32.0
bioconductor-org.hs.eg.db
>=3.16.0
bioconductor-org.mm.eg.db
>=3.16.0
bioconductor-pathview
>=1.38.0
bioconductor-rhdf5
>=2.42.0
bioconductor-s4vectors
>=0.36.0
bioconductor-summarizedexperiment
>=1.28.0
bioconductor-tximport
>=1.26.0
bioconductor-vsn
>=3.66.0
r-acidbase
>=0.6.15
r-acidcli
>=0.2.7
r-acidexperiment
>=0.4.7
r-acidgenerics
>=0.6.7
r-acidgenomes
>=0.5.0
r-acidgsea
>=0.8.8
r-acidplots
>=0.5.5
r-base
>=4.2,<4.3.0a0
r-basejump
>=0.16.5
r-bcbiobase
>=0.8.1
r-deseqanalysis
>=0.6.8
r-ggnewscale
>=0.4.8
r-ggplot2
>=3.4.2
r-goalie
>=0.6.8
r-hexbin
>=1.28.3
r-knitr
>=1.42
r-pheatmap
>=1.0.12
r-pipette
>=0.10.9
r-r.utils
>=2.12.2
r-rmarkdown
>=2.21
r-stringi
>=1.7.12
r-syntactic
>=0.6.6
r-viridis
>=0.6.2
r-withr
>=2.5.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install r-bcbiornaseq
and update with:
conda update r-bcbiornaseq
or use the docker container:
docker pull quay.io/biocontainers/r-bcbiornaseq:<tag>
(see r-bcbiornaseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/r-bcbiornaseq/README.html)