recipe r-bcbiornaseq

R package for bcbio RNA-seq analysis.

Homepage

https://r.acidgenomics.com/packages/bcbiornaseq/

Developer docs

https://github.com/hbc/bcbioRNASeq

License

GPL / AGPL-3.0

Recipe

/r-bcbiornaseq/meta.yaml

package r-bcbiornaseq

Versions

0.3.42-0,  0.3.41-0,  0.3.40-1,  0.3.40-0,  0.3.39-0,  0.3.37-0,  0.3.36-0,  0.3.34-0,  0.3.33-1, 

0.3.42-0,  0.3.41-0,  0.3.40-1,  0.3.40-0,  0.3.39-0,  0.3.37-0,  0.3.36-0,  0.3.34-0,  0.3.33-1,  0.3.33-0,  0.3.32-0,  0.3.31-0,  0.3.30-0,  0.3.29-0,  0.3.28-0,  0.3.27-0,  0.3.26-0,  0.2.9-0,  0.2.8-0,  0.2.7-0,  0.2.4-0,  0.2.4a-0,  0.2.3a-0,  0.1.2-0

Depends

• bioconductor-biocstyle >=2.18

• bioconductor-clusterprofiler >=3.18

• bioconductor-degreport >=1.26

• bioconductor-deseq2 >=1.30

• bioconductor-dose >=3.16

• bioconductor-edger >=3.32

• bioconductor-enrichplot >=1.10

• bioconductor-ensdb.hsapiens.v75 >=2.99

• bioconductor-org.hs.eg.db >=3.12

• bioconductor-org.mm.eg.db >=3.12

• bioconductor-pathview >=1.30

• bioconductor-rhdf5 >=2.34

• bioconductor-tximport >=1.18

• bioconductor-vsn >=3.58

• r-acidgenerics >=0.5.18

• r-acidgsea >=0.6.4

• r-acidplots >=0.3.7

• r-base >=4.1,<4.2.0a0

• r-basejump >=0.14.19

• r-bcbiobase >=0.6.21

• r-deseqanalysis >=0.4.2

• r-ggnewscale >=0.4.5

• r-ggplot2 >=3.3.5

• r-goalie >=0.5.2

• r-hexbin >=1.28

• r-knitr >=1.33

• r-rmarkdown >=2.9

• r-viridis >=0.6.1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-bcbiornaseq

and update with:

conda update r-bcbiornaseq

or use the docker container:

docker pull quay.io/biocontainers/r-bcbiornaseq:<tag>

(see r-bcbiornaseq/tags for valid values for <tag>)

Download stats

Link to this page

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