Package Recipe 'r-bcbiornaseq'

recipe r-bcbiornaseq

R package for bcbio RNA-seq analysis.

Homepage:: https://r.acidgenomics.com/packages/bcbiornaseq/
Developer docs:: https://github.com/hbc/bcbioRNASeq
License:: GPL / AGPL-3.0
Recipe:: /r-bcbiornaseq/meta.yaml

package r-bcbiornaseq¶

Versions:

0.5.4-1, 0.5.4-0, 0.5.3-1, 0.5.3-0, 0.5.2-0, 0.5.1-1, 0.5.1-0, 0.4.0-0, 0.3.44-0,

0.5.4-1, 0.5.4-0, 0.5.3-1, 0.5.3-0, 0.5.2-0, 0.5.1-1, 0.5.1-0, 0.4.0-0, 0.3.44-0, 0.3.42-0, 0.3.41-0, 0.3.40-1, 0.3.40-0, 0.3.39-0, 0.3.37-0, 0.3.36-0, 0.3.34-0, 0.3.33-1, 0.3.33-0, 0.3.32-0, 0.3.31-0, 0.3.30-0, 0.3.29-0, 0.3.28-0, 0.3.27-0, 0.3.26-0, 0.2.9-0, 0.2.8-0, 0.2.7-0, 0.2.4-0, 0.2.4a-0, 0.2.3a-0, 0.1.2-0

Depends:

bioconductor-biocgenerics >=0.44.0
bioconductor-biocstyle >=2.26.0
bioconductor-clusterprofiler >=4.6.0
bioconductor-degreport >=1.34.0
bioconductor-deseq2 >=1.38.0
bioconductor-dose >=3.24.0
bioconductor-edger >=3.40.0
bioconductor-enrichplot >=1.18.0
bioconductor-ensdb.hsapiens.v75 >=2.99.0
bioconductor-genomeinfodb >=1.34.0
bioconductor-iranges >=2.32.0
bioconductor-org.hs.eg.db >=3.16.0
bioconductor-org.mm.eg.db >=3.16.0
bioconductor-pathview >=1.38.0
bioconductor-rhdf5 >=2.42.0
bioconductor-s4vectors >=0.36.0
bioconductor-summarizedexperiment >=1.28.0
bioconductor-tximport >=1.26.0
bioconductor-vsn >=3.66.0
r-acidbase >=0.6.15
r-acidcli >=0.2.7
r-acidexperiment >=0.4.7
r-acidgenerics >=0.6.7
r-acidgenomes >=0.5.0
r-acidgsea >=0.8.8
r-acidplots >=0.5.5
r-base >=4.2,<4.3.0a0
r-basejump >=0.16.5
r-bcbiobase >=0.8.1
r-deseqanalysis >=0.6.8
r-ggnewscale >=0.4.8
r-ggplot2 >=3.4.2
r-goalie >=0.6.8
r-hexbin >=1.28.3
r-knitr >=1.42
r-pheatmap >=1.0.12
r-pipette >=0.10.9
r-r.utils >=2.12.2
r-rmarkdown >=2.21
r-stringi >=1.7.12
r-syntactic >=0.6.6
r-viridis >=0.6.2
r-withr >=2.5.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-bcbiornaseq

and update with:

conda update r-bcbiornaseq

or use the docker container:

docker pull quay.io/biocontainers/r-bcbiornaseq:<tag>

(see r-bcbiornaseq/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-bcbiornaseq/README.html)