recipe r-bcbiornaseq

Quality control and differential expression for bcbio RNA-seq experiments.

Homepage:https://github.com/hbc/bcbioRNASeq License:MIT Recipe:/r-bcbiornaseq/meta.yaml

package r-bcbiornaseq

Versions:

0.2.8-0, 0.2.7-0, 0.2.4-0, 0.2.4a-0, 0.2.3a-0, 0.1.2-0

Depends:

• bioconductor-degreport
• bioconductor-deseq2
• bioconductor-edger
• bioconductor-summarizedexperiment
• bioconductor-tximport
• bioconductor-vsn
• r-base >=3.5.1,<3.5.2.0a0
• r-bcbiobase
• r-ggrepel
• r-pbapply
• r-rmarkdown
• r-tidyverse

Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-bcbiornaseq

and update with:

conda update r-bcbiornaseq

or use the docker container:

docker pull quay.io/biocontainers/r-bcbiornaseq:<tag>

(see r-bcbiornaseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-bcbiornaseq/README.html)