recipe r-bcbiornaseq

Quality control and differential expression for bcbio RNA-seq experiments.

Homepage

https://github.com/hbc/bcbioRNASeq

License

MIT

Recipe

/r-bcbiornaseq/meta.yaml

package r-bcbiornaseq

Versions

0.2.9-0, 0.2.8-0, 0.2.7-0, 0.2.4-0, 0.2.4a-0, 0.2.3a-0, 0.1.2-0

Depends

• bioconductor-degreport

• bioconductor-deseq2

• bioconductor-edger

• bioconductor-genomeinfodbdata

• bioconductor-summarizedexperiment

• bioconductor-tximport

• bioconductor-vsn

• r-base >=3.5.1,<3.5.2.0a0

• r-bcbiobase

• r-ggrepel

• r-hexbin

• r-pbapply

• r-rmarkdown

• r-tidyverse

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-bcbiornaseq

and update with:

conda update r-bcbiornaseq

or use the docker container:

docker pull quay.io/biocontainers/r-bcbiornaseq:<tag>

(see r-bcbiornaseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-bcbiornaseq/README.html)