recipe r-bcbiornaseq

R package for bcbio RNA-seq analysis.

Homepage:

https://r.acidgenomics.com/packages/bcbiornaseq/

Developer docs:

https://github.com/hbc/bcbioRNASeq

License:

GPL / AGPL-3.0

Recipe:

/r-bcbiornaseq/meta.yaml

package r-bcbiornaseq

Versions:

0.5.1-1,  0.5.1-0,  0.4.0-0,  0.3.44-0,  0.3.42-0,  0.3.41-0,  0.3.40-1,  0.3.40-0,  0.3.39-0, 

0.5.1-1,  0.5.1-0,  0.4.0-0,  0.3.44-0,  0.3.42-0,  0.3.41-0,  0.3.40-1,  0.3.40-0,  0.3.39-0,  0.3.37-0,  0.3.36-0,  0.3.34-0,  0.3.33-1,  0.3.33-0,  0.3.32-0,  0.3.31-0,  0.3.30-0,  0.3.29-0,  0.3.28-0,  0.3.27-0,  0.3.26-0,  0.2.9-0,  0.2.8-0,  0.2.7-0,  0.2.4-0,  0.2.4a-0,  0.2.3a-0,  0.1.2-0

Depends:

• bioconductor-biocgenerics >=0.42.0

• bioconductor-biocstyle >=2.24.0

• bioconductor-clusterprofiler >=4.4.4

• bioconductor-degreport >=1.32.0

• bioconductor-deseq2 >=1.36.0

• bioconductor-dose >=3.22.1

• bioconductor-edger >=3.38.0

• bioconductor-enrichplot >=1.16.2

• bioconductor-ensdb.hsapiens.v75 >=2.99.0

• bioconductor-genomeinfodb >=1.32.0

• bioconductor-iranges >=2.30.0

• bioconductor-org.hs.eg.db >=3.15.0

• bioconductor-org.mm.eg.db >=3.15.0

• bioconductor-pathview >=1.36.1

• bioconductor-rhdf5 >=2.40.0

• bioconductor-s4vectors >=0.34.0

• bioconductor-summarizedexperiment >=1.26.0

• bioconductor-tximport >=1.24.0

• bioconductor-vsn >=3.64.0

• r-acidbase >=0.6.8

• r-acidcli >=0.2.4

• r-acidexperiment >=0.4.4

• r-acidgenerics >=0.6.4

• r-acidgenomes >=0.4.4

• r-acidgsea >=0.8.6

• r-acidplots >=0.5.1

• r-base >=4.2,<4.3.0a0

• r-basejump >=0.16.0

• r-bcbiobase >=0.8.1

• r-deseqanalysis >=0.6.6

• r-ggnewscale >=0.4.8

• r-ggplot2 >=3.3.6

• r-goalie >=0.6.6

• r-hexbin >=1.28.0

• r-knitr >=1.40

• r-pheatmap >=1.0.12

• r-pipette >=0.10.0

• r-r.utils >=2.12.0

• r-rmarkdown >=2.17

• r-stringi >=1.7.8

• r-syntactic >=0.6.3

• r-viridis >=0.6.2

• r-withr >=2.5.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-bcbiornaseq

and update with:

conda update r-bcbiornaseq

or use the docker container:

docker pull quay.io/biocontainers/r-bcbiornaseq:<tag>

(see r-bcbiornaseq/tags for valid values for <tag>)

Download stats

Link to this page

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