- recipe r-bcbiornaseq
R package for bcbio RNA-seq analysis.
- Homepage:
- Developer docs:
- License:
GPL / AGPL-3.0
- Recipe:
- package r-bcbiornaseq¶
-
- Versions:
0.5.1-1
,0.5.1-0
,0.4.0-0
,0.3.44-0
,0.3.42-0
,0.3.41-0
,0.3.40-1
,0.3.40-0
,0.3.39-0
,0.5.1-1
,0.5.1-0
,0.4.0-0
,0.3.44-0
,0.3.42-0
,0.3.41-0
,0.3.40-1
,0.3.40-0
,0.3.39-0
,0.3.37-0
,0.3.36-0
,0.3.34-0
,0.3.33-1
,0.3.33-0
,0.3.32-0
,0.3.31-0
,0.3.30-0
,0.3.29-0
,0.3.28-0
,0.3.27-0
,0.3.26-0
,0.2.9-0
,0.2.8-0
,0.2.7-0
,0.2.4-0
,0.2.4a-0
,0.2.3a-0
,0.1.2-0
- Depends:
bioconductor-biocgenerics
>=0.42.0
bioconductor-biocstyle
>=2.24.0
bioconductor-clusterprofiler
>=4.4.4
bioconductor-degreport
>=1.32.0
bioconductor-deseq2
>=1.36.0
bioconductor-dose
>=3.22.1
bioconductor-edger
>=3.38.0
bioconductor-enrichplot
>=1.16.2
bioconductor-ensdb.hsapiens.v75
>=2.99.0
bioconductor-genomeinfodb
>=1.32.0
bioconductor-iranges
>=2.30.0
bioconductor-org.hs.eg.db
>=3.15.0
bioconductor-org.mm.eg.db
>=3.15.0
bioconductor-pathview
>=1.36.1
bioconductor-rhdf5
>=2.40.0
bioconductor-s4vectors
>=0.34.0
bioconductor-summarizedexperiment
>=1.26.0
bioconductor-tximport
>=1.24.0
bioconductor-vsn
>=3.64.0
r-acidbase
>=0.6.8
r-acidcli
>=0.2.4
r-acidexperiment
>=0.4.4
r-acidgenerics
>=0.6.4
r-acidgenomes
>=0.4.4
r-acidgsea
>=0.8.6
r-acidplots
>=0.5.1
r-base
>=4.2,<4.3.0a0
r-basejump
>=0.16.0
r-bcbiobase
>=0.8.1
r-deseqanalysis
>=0.6.6
r-ggnewscale
>=0.4.8
r-ggplot2
>=3.3.6
r-goalie
>=0.6.6
r-hexbin
>=1.28.0
r-knitr
>=1.40
r-pheatmap
>=1.0.12
r-pipette
>=0.10.0
r-r.utils
>=2.12.0
r-rmarkdown
>=2.17
r-stringi
>=1.7.8
r-syntactic
>=0.6.3
r-viridis
>=0.6.2
r-withr
>=2.5.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install r-bcbiornaseq
and update with:
conda update r-bcbiornaseq
or use the docker container:
docker pull quay.io/biocontainers/r-bcbiornaseq:<tag>
(see r-bcbiornaseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/r-bcbiornaseq/README.html)