recipe r-bcbiornaseq

R package for bcbio RNA-seq analysis.

Homepage

https://r.acidgenomics.com/packages/bcbiornaseq/

Developer docs

https://github.com/hbc/bcbioRNASeq

License

GPL / AGPL-3.0

Recipe

/r-bcbiornaseq/meta.yaml

package r-bcbiornaseq

Versions

0.4.0-0,  0.3.44-0,  0.3.42-0,  0.3.41-0,  0.3.40-1,  0.3.40-0,  0.3.39-0,  0.3.37-0,  0.3.36-0, 

0.4.0-0,  0.3.44-0,  0.3.42-0,  0.3.41-0,  0.3.40-1,  0.3.40-0,  0.3.39-0,  0.3.37-0,  0.3.36-0,  0.3.34-0,  0.3.33-1,  0.3.33-0,  0.3.32-0,  0.3.31-0,  0.3.30-0,  0.3.29-0,  0.3.28-0,  0.3.27-0,  0.3.26-0,  0.2.9-0,  0.2.8-0,  0.2.7-0,  0.2.4-0,  0.2.4a-0,  0.2.3a-0,  0.1.2-0

Depends

• bioconductor-biocgenerics

• bioconductor-biocstyle

• bioconductor-clusterprofiler

• bioconductor-degreport

• bioconductor-deseq2

• bioconductor-dose

• bioconductor-edger

• bioconductor-enrichplot

• bioconductor-ensdb.hsapiens.v75

• bioconductor-org.hs.eg.db

• bioconductor-org.mm.eg.db

• bioconductor-pathview

• bioconductor-rhdf5

• bioconductor-s4vectors

• bioconductor-summarizedexperiment

• bioconductor-tximport

• bioconductor-vsn

• r-acidbase

• r-acidcli

• r-acidexperiment

• r-acidgenerics

• r-acidgenomes

• r-acidgsea

• r-acidplots

• r-base >=4.1,<4.2.0a0

• r-basejump

• r-bcbiobase

• r-deseqanalysis

• r-ggnewscale

• r-ggplot2

• r-goalie

• r-hexbin

• r-knitr

• r-rmarkdown

• r-sessioninfo

• r-syntactic

• r-viridis

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-bcbiornaseq

and update with:

conda update r-bcbiornaseq

or use the docker container:

docker pull quay.io/biocontainers/r-bcbiornaseq:<tag>

(see r-bcbiornaseq/tags for valid values for <tag>)

Download stats

Link to this page

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