histoneHMM is a software to analyse ChIP-seq data of histone modifications with broad genomic footprints like H3K27me3. It allows for calling modified regions in single samples as well as for calling differentially modified regions in a comparison of two samples

Home http://histonehmm.molgen.mpg.de/
Versions 1.7, 1.6
License GPL
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-histonehmm
Development https://github.com/matthiasheinig/histoneHMM


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-histonehmm

and update with:

conda update r-histonehmm


A Docker container is available at https://quay.io/repository/biocontainers/r-histonehmm.