r-ic10

downloads

Implementation of the classifier described in the paper ‘Genome-driven integrated classification of breast cancer validated in over 7,500 samples’ (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression from breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group.

Home https://CRAN.R-project.org/package=iC10
Versions 1.1.3
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-ic10

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-ic10

and update with:

conda update r-ic10

docker

A Docker container is available at https://quay.io/repository/biocontainers/r-ic10.