recipe r-ic10

Implementation of the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group.

Homepage:

https://CRAN.R-project.org/package=iC10

License:

GPL3 / GPL-3

Recipe:

/r-ic10/meta.yaml

package r-ic10

Versions:

1.5-5,  1.5-4,  1.5-3,  1.5-2,  1.5-1,  1.5-0,  1.4.2-2,  1.4.2-1,  1.4.2-0, 

1.5-5,  1.5-4,  1.5-3,  1.5-2,  1.5-1,  1.5-0,  1.4.2-2,  1.4.2-1,  1.4.2-0,  1.1.3-0

Depends:

• bioconductor-impute

• r-base >=4.2,<4.3.0a0

• r-ic10trainingdata

• r-pamr

Required By:

• bioconductor-genefu

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-ic10

and update with:

conda update r-ic10

or use the docker container:

docker pull quay.io/biocontainers/r-ic10:<tag>

(see r-ic10/tags for valid values for <tag>)

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