recipe r-imputelcmd

The package contains a collection of functions for left-censored missing data imputation. Left-censoring is a special case of missing not at random (MNAR) mechanism that generates non-responses in proteomics experiments. The package also contains functions to artificially generate peptide/protein expression data (log-transformed) as random draws from a multivariate Gaussian distribution as well as a function to generate missing data (both randomly and non-randomly). For comparison reasons, the package also contains several wrapper functions for the imputation of non-responses that are missing at random. * New functionality has been added: a hybrid method that allows the imputation of missing values in a more complex scenario where the missing data are both MAR and MNAR.

Homepage:

https://CRAN.R-project.org/package=imputeLCMD

License:

GPL3 / GPL-2.0-or-later

Recipe:

/r-imputelcmd/meta.yaml

package r-imputelcmd

Versions:

2.1-1,  2.1-0,  2.0-6,  2.0-5,  2.0-4,  2.0-3,  2.0-2,  2.0-1,  2.0-0

Depends:

• bioconductor-impute

• bioconductor-pcamethods

• r-base >=4.2,<4.3.0a0

• r-norm

• r-tmvtnorm

Required By:

• bioconductor-dep

• bioconductor-lipidr

• bioconductor-rexposome

• bioconductor-matrixqcvis

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-imputelcmd

and update with:

conda update r-imputelcmd

or use the docker container:

docker pull quay.io/biocontainers/r-imputelcmd:<tag>

(see r-imputelcmd/tags for valid values for <tag>)

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