r-leapp

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These functions take a gene expression value matrix, a primary covariate vector, an additional known covariates matrix. A two stage analysis is applied to counter the effects of latent variables on the rankings of hypotheses. The estimation and adjustment of latent effects are proposed by Sun, Zhang and Owen (2011). “leapp” is developed in the context of microarray experiments, but may be used as a general tool for high throughput data sets where dependence may be involved.

Home https://CRAN.R-project.org/package=leapp
Versions 1.2
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-leapp

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-leapp

and update with:

conda update r-leapp

docker

A Docker container is available at https://quay.io/repository/biocontainers/r-leapp.