recipe r-leidenbase

An R to C interface that runs the Leiden community detection algorithm to find a basic partition

Homepage:

https://cole-trapnell-lab.github.io/leidenbase/

License:

GPL-2.0-only, GPL-3.0-only, BSD

Recipe:

/r-leidenbase/meta.yaml

package r-leidenbase

versions:

0.1.31-0,  0.1.27-2,  0.1.27-1,  0.1.18-0,  0.1.12-0,  0.1.3-3,  0.1.3-2,  0.1.3-1,  0.1.3-0, 

0.1.31-0,  0.1.27-2,  0.1.27-1,  0.1.18-0,  0.1.12-0,  0.1.3-3,  0.1.3-2,  0.1.3-1,  0.1.3-0,  0.1.0-3,  0.1.0-2,  0.1.0-1,  0.1.0-0

depends glpk:

>=5.0,<6.0a0

depends gmp:

>=6.3.0,<7.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc:

>=13

depends libgfortran:

depends libgfortran5:

>=13.3.0

depends liblapack:

>=3.9.0,<4.0a0

depends liblzma:

>=5.6.3,<6.0a0

depends libstdcxx:

>=13

depends libxml2:

>=2.13.5,<3.0a0

depends libzlib:

>=1.3.1,<2.0a0

depends r-base:

>=4.4,<4.5.0a0

depends r-igraph:

>=1.3.4

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-leidenbase

and update with::

   mamba update r-leidenbase

To create a new environment, run:

mamba create --name myenvname r-leidenbase

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-leidenbase:<tag>

(see `r-leidenbase/tags`_ for valid values for ``<tag>``)

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