recipe r-workflowscriptscommon

Common functions for making R function wapper scripts. Functions in R packages are hard to call when building workflows outside of R, so this package is used by other packages (e.g. r-seurat-scripts) to add sets of simple wrappers with robust argument parsing.

Homepage:

https://github.com/ebi-gene-expression-group/workflowscriptscommon

License:

GPL3 / GPL-3.0-or-later

Recipe:

/r-workflowscriptscommon/meta.yaml

package r-workflowscriptscommon

(downloads) docker_r-workflowscriptscommon

versions:
0.0.8-5,  0.0.8-4,  0.0.8-3,  0.0.8-2,  0.0.8-1,  0.0.8-0,  0.0.7-3,  0.0.7-2,  0.0.7-1, 

0.0.8-5,  0.0.8-4,  0.0.8-3,  0.0.8-2,  0.0.8-1,  0.0.8-0,  0.0.7-3,  0.0.7-2,  0.0.7-1,  0.0.7-0,  0.0.6-0,  0.0.5-0,  0.0.4-1,  0.0.4-0,  0.0.2-0,  0.0.1-0

depends r-base:

>=4.0,<4.1.0a0

depends r-optparse:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-workflowscriptscommon

and update with::

   mamba update r-workflowscriptscommon

To create a new environment, run:

mamba create --name myenvname r-workflowscriptscommon

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-workflowscriptscommon:<tag>

(see `r-workflowscriptscommon/tags`_ for valid values for ``<tag>``)

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Link to this page

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