recipe racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads.

Homepage:

https://github.com/lbcb-sci/racon

License:

MIT

Recipe:

/racon/meta.yaml

package racon

(downloads) docker_racon

versions:
1.5.0-3,  1.5.0-2,  1.5.0-1,  1.5.0-0,  1.4.20-2,  1.4.20-1,  1.4.20-0,  1.4.13-0,  1.4.12-0, 

1.5.0-3,  1.5.0-2,  1.5.0-1,  1.5.0-0,  1.4.20-2,  1.4.20-1,  1.4.20-0,  1.4.13-0,  1.4.12-0,  1.4.11-0,  1.4.10-0,  1.4.7-0,  1.4.3-0,  1.4.2-0,  1.4.0-0,  1.3.3-1,  1.3.2-1,  1.3.2-0,  1.3.1-5,  1.3.1-4,  1.3.1-1,  1.3.1-0,  1.3.0-1,  1.2.1-1,  1.2.0-1,  1.2.0-0,  1.1.0-0,  1.0.1-0,  1.0.0-1,  1.0.0-0,  0.5.0-2,  0.5.0-1,  0.5.0-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends python:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install racon

and update with::

   mamba update racon

To create a new environment, run:

mamba create --name myenvname racon

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/racon:<tag>

(see `racon/tags`_ for valid values for ``<tag>``)

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