recipe rad_haplotyper

A program for building SNP haplotypes from RAD sequencing data

Homepage:

https://github.com/chollenbeck/rad_haplotyper

License:

Perl

Recipe:

/rad_haplotyper/meta.yaml

package rad_haplotyper

Versions:

1.1.9-6,  1.1.9-5,  1.1.9-4,  1.1.9-3,  1.1.9-2,  1.1.9-1,  1.1.9-0,  1.1.7-0,  1.1.6-0

Depends:

• ddocent

• libgcc-ng >=10.3.0

• perl >=5.32.1,<5.33.0a0 *_perl5

• perl-app-cpanminus

• perl-bio-cigar

• perl-bio-samtools

• perl-bioperl

• perl-data-dumper

• perl-getopt-long

• perl-list-moreutils

• perl-module-build

• perl-parallel-forkmanager

• perl-pod-usage

• perl-term-progressbar

• perl-vcftools-vcf <0.700

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install rad_haplotyper

and update with:

conda update rad_haplotyper

or use the docker container:

docker pull quay.io/biocontainers/rad_haplotyper:<tag>

(see rad_haplotyper/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rad_haplotyper/README.html)