recipe rad_haplotyper

A program for building SNP haplotypes from RAD sequencing data

Homepage:

https://github.com/chollenbeck/rad_haplotyper

License:

Perl

Recipe:

/rad_haplotyper/meta.yaml

package rad_haplotyper

versions:

1.1.9-8,  1.1.9-7,  1.1.9-6,  1.1.9-5,  1.1.9-4,  1.1.9-3,  1.1.9-2,  1.1.9-1,  1.1.9-0, 

1.1.9-8,  1.1.9-7,  1.1.9-6,  1.1.9-5,  1.1.9-4,  1.1.9-3,  1.1.9-2,  1.1.9-1,  1.1.9-0,  1.1.7-0,  1.1.6-0

depends ddocent:

>=2.9.8,<3.0a0

depends libgcc:

>=13

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends perl-app-cpanminus:

depends perl-bio-cigar:

depends perl-bio-samtools:

depends perl-bioperl:

depends perl-data-dumper:

depends perl-getopt-long:

>=2.58,<3.0a0

depends perl-list-moreutils:

depends perl-module-build:

0.4232.*

depends perl-parallel-forkmanager:

>=2.3,<3.0a0

depends perl-pod-usage:

depends perl-term-progressbar:

depends perl-vcftools-vcf:

<0.700

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rad_haplotyper

and update with::

   mamba update rad_haplotyper

To create a new environment, run:

mamba create --name myenvname rad_haplotyper

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rad_haplotyper:<tag>

(see `rad_haplotyper/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rad_haplotyper/README.html)