recipe raven-assembler

Raven is an assembler for raw reads generated by the third generation sequencing.

Homepage:

https://github.com/lbcb-sci/raven

Documentation:

https://github.com/lbcb-sci/raven/blob/1.8.3/README.md

License:

MIT / MIT

Recipe:

/raven-assembler/meta.yaml

Links:

biotools: raven, usegalaxy-eu: raven

package raven-assembler

(downloads) docker_raven-assembler

versions:
1.8.3-3,  1.8.3-2,  1.8.3-1,  1.8.3-0,  1.8.2-0,  1.8.1-3,  1.8.1-2,  1.8.1-1,  1.8.1-0, 

1.8.3-3,  1.8.3-2,  1.8.3-1,  1.8.3-0,  1.8.2-0,  1.8.1-3,  1.8.1-2,  1.8.1-1,  1.8.1-0,  1.8.0-0,  1.7.0-1,  1.7.0-0,  1.6.1-0,  1.6.0-0,  1.5.3-0,  1.5.1-0,  1.5.0-1,  1.5.0-0,  1.4.0-0,  1.3.0-0,  1.2.2-0,  1.1.10-0,  1.1.9-0,  1.1.5-0,  0.0.8-0,  0.0.7-0,  0.0.5-0,  0.0.1-0,  0.0.0-0

depends _openmp_mutex:

>=4.5

depends libgcc:

>=13

depends libgomp:

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install raven-assembler

and update with::

   mamba update raven-assembler

To create a new environment, run:

mamba create --name myenvname raven-assembler

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/raven-assembler:<tag>

(see `raven-assembler/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/raven-assembler/README.html)