recipe refseq_masher

refseq_masher finds what NCBI RefSeq genomes match or are contained within your sequence data using Mash

Homepage:

https://github.com/phac-nml/refseq_masher

License:

Apache / Apache 2.0

Recipe:

/refseq_masher/meta.yaml

package refseq_masher

versions:

0.1.2-0,  0.1.1-2,  0.1.1-1,  0.1.1-0,  0.1.0-0

depends click:

depends mash:

>=2.0

depends numpy:

>=1.12.1

depends pandas:

>=0.20.1

depends python:

>=3

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install refseq_masher

and update with::

   mamba update refseq_masher

To create a new environment, run:

mamba create --name myenvname refseq_masher

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/refseq_masher:<tag>

(see `refseq_masher/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/refseq_masher/README.html)