recipe refseq_masher

refseq_masher finds what NCBI RefSeq genomes match or are contained within your sequence data using Mash

Homepage

https://github.com/phac-nml/refseq_masher

License

Apache / Apache 2.0

Recipe

/refseq_masher/meta.yaml

package refseq_masher

(downloads) docker_refseq_masher

Versions

0.1.1-1, 0.1.1-0, 0.1.0-0

Depends click

Depends mash

>=2.0

Depends numpy

>=1.12.1

Depends pandas

>=0.20.1

Depends python

>=3.5,<3.6.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install refseq_masher

and update with:

conda update refseq_masher

or use the docker container:

docker pull quay.io/biocontainers/refseq_masher:<tag>

(see refseq_masher/tags for valid values for <tag>)