recipe relocate2

a high resolution transposable element insertion sites mapping tool for population resequencing

Homepage:

https://github.com/stajichlab/RelocaTE2

License:

unknown

Recipe:

/relocate2/meta.yaml

package relocate2

versions:

2.0.1-6,  2.0.1-5,  2.0.1-4,  2.0.1-2,  2.0.1-0,  2.0.0-1

depends bedtools:

2.26.0-0

depends blat:

35

depends bowtie2:

2.2.8

depends bwa:

0.6.2-0

depends perl:

>=5.10.0

depends pysam:

0.9.0

depends python:

2.7.12

depends samtools:

1.3-0

depends seqtk:

1.2-0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install relocate2

and update with::

   mamba update relocate2

To create a new environment, run:

mamba create --name myenvname relocate2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/relocate2:<tag>

(see `relocate2/tags`_ for valid values for ``<tag>``)

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