recipe riboraptor

Python package to analyse ribosome profiling data

Homepage:

https://github.com/saketkc/riboraptor

Documentation:

https://saketkc.github.io/riboraptor

License:

BSD / BSD License

Recipe:

/riboraptor/meta.yaml

package riboraptor

Versions:

0.2.2-2,  0.2.2-1,  0.2.2-0

Depends:

• biopython >=1.70

• click >=6.0

• click-help-colors >=0.3

• fastqc

• htseq >=0.9.1

• matplotlib >=2.1.0

• numpy >=1.11.0

• pandas >=0.20.3

• pybedtools >=0.7.10

• pybigwig >=0.2.8

• pyfaidx >=0.5.0

• pysam >=0.11.2.2

• python >=3

• scipy >=0.19.1

• seaborn >=0.8.1

• six >=1.11.0

• snakemake

• sra-tools

• star

• statsmodels >=0.8.0

• trim-galore

• ucsc-bedgraphtobigwig

• ucsc-bedsort

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install riboraptor

and update with:

conda update riboraptor

or use the docker container:

docker pull quay.io/biocontainers/riboraptor:<tag>

(see riboraptor/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/riboraptor/README.html)