recipe rnastructure

RNAstructure is a complete package for RNA and DNA secondary structure prediction and analysis. It includes algorithms for secondary structure prediction, including facility to predict base pairing probabilities. It also can be used to predict bimolecular structures and can predict the equilibrium binding affinity of an oligonucleotide to a structured RNA target. This is useful for siRNA design. It can also predict secondary structures common to two, unaligned sequences, which is much more accurate than single sequence secondary structure prediction. Finally, RNAstructure can take a number of different types of experiment mapping data to constrain or restrain structure prediction. These include chemical mapping, enzymatic mapping, NMR, and SHAPE data.

Homepage

http://rna.urmc.rochester.edu/RNAstructure.html

License

GPL / GPLv2

Recipe

/rnastructure/meta.yaml

Links

biotools: rnastructure

package rnastructure

(downloads) docker_rnastructure

Versions

6.1-0, 6.0-1, 6.0-0, 5.7-2, 5.7-1, 5.7-0

Depends
  • libgcc-ng >=4.9

  • libstdcxx-ng >=4.9

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rnastructure

and update with:

conda update rnastructure

or use the docker container:

docker pull quay.io/biocontainers/rnastructure:<tag>

(see rnastructure/tags for valid values for <tag>)