recipe rnastructure

RNAstructure is a complete package for RNA and DNA secondary structure prediction and analysis. It includes algorithms for secondary structure prediction, including facility to predict base pairing probabilities. It also can be used to predict bimolecular structures and can predict the equilibrium binding affinity of an oligonucleotide to a structured RNA target. This is useful for siRNA design. It can also predict secondary structures common to two, unaligned sequences, which is much more accurate than single sequence secondary structure prediction. Finally, RNAstructure can take a number of different types of experiment mapping data to constrain or restrain structure prediction. These include chemical mapping, enzymatic mapping, NMR, and SHAPE data.

Homepage:

http://rna.urmc.rochester.edu/RNAstructure.html

License:

GPL / GPLv2

Recipe:

/rnastructure/meta.yaml

Links:

biotools: rnastructure

package rnastructure

(downloads) docker_rnastructure

versions:
6.4-0,  6.3-3,  6.3-2,  6.3-1,  6.3-0,  6.1-2,  6.1-1,  6.1-0,  6.0-1, 

6.4-0,  6.3-3,  6.3-2,  6.3-1,  6.3-0,  6.1-2,  6.1-1,  6.1-0,  6.0-1,  6.0-0,  5.7-2,  5.7-1,  5.7-0

depends _openmp_mutex:

>=4.5

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rnastructure

and update with::

   mamba update rnastructure

To create a new environment, run:

mamba create --name myenvname rnastructure

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rnastructure:<tag>

(see `rnastructure/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rnastructure/README.html)