recipe rnftools

RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.

Homepage:

http://karel-brinda.github.io/rnftools

License:

MIT

Recipe:

/rnftools/meta.yaml

package rnftools

Versions:

0.3.1.3-0,  0.3.1.2-2,  0.3.1.2-1,  0.3.1.1-2,  0.3.1.1-1,  0.3.1.0-2,  0.3.1.0-1,  0.3.0.2-2,  0.3.0.2-1, 

0.3.1.3-0,  0.3.1.2-2,  0.3.1.2-1,  0.3.1.1-2,  0.3.1.1-1,  0.3.1.0-2,  0.3.1.0-1,  0.3.0.2-2,  0.3.0.2-1,  0.3.0.2-0

Depends:

• art

• beautifulsoup4

• bwa

• curesim

• dwgsim

• gnuplot >=5.0

• mason

• pyfaidx

• pysam

• python >=3.6,<3.7.0a0

• reportlab 3.3.0

• samtools

• snakemake-minimal

• svg42pdf >=0.2.2

• wgsim

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install rnftools

and update with:

conda update rnftools

or use the docker container:

docker pull quay.io/biocontainers/rnftools:<tag>

(see rnftools/tags for valid values for <tag>)

Download stats

Link to this page

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