recipe rnftools

RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.

Homepage

http://karel-brinda.github.io/rnftools

License

MIT

Recipe

/rnftools/meta.yaml

package rnftools

(downloads) docker_rnftools

Versions

0.3.1.3-0, 0.3.1.2-2, 0.3.1.2-1, 0.3.1.1-2, 0.3.1.1-1, 0.3.1.0-2, 0.3.1.0-1, 0.3.0.2-2, 0.3.0.2-1, 0.3.0.2-0

Depends art

Depends beautifulsoup4

Depends bwa

Depends curesim

Depends dwgsim

Depends gnuplot

>=5.0

Depends mason

Depends pyfaidx

Depends pysam

Depends python

>=3.6,<3.7.0a0

Depends reportlab

3.3.0

Depends samtools

Depends snakemake-minimal

Depends svg42pdf

>=0.2.2

Depends wgsim

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rnftools

and update with:

conda update rnftools

or use the docker container:

docker pull quay.io/biocontainers/rnftools:<tag>

(see rnftools/tags for valid values for <tag>)