recipe rodeo

RODEO evaluates one or many genes, characterizing a gene neighborhood based on the presence of profile hidden Markov models (pHMMs). Because RiPP precursor peptides are small and often evade annotation in sequence databases, RODEO can also manually translate small ORFs (open reading frames). A combination of support vector machine (SVM) learning and motif analysis can be used to scan unannotated intergenic regions for RiPP precursors.

Homepage:

http://ripp.rodeo/index.html

License:

AGPL

Recipe:

/rodeo/meta.yaml

package rodeo

Versions:

2.3.3-1,  2.3.3-0

Depends:

• biopython

• hmmer

• meme

• numpy

• python >=3

• scikit-learn

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install rodeo

and update with:

conda update rodeo

or use the docker container:

docker pull quay.io/biocontainers/rodeo:<tag>

(see rodeo/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rodeo/README.html)