recipe salmon

Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Homepage:

https://github.com/COMBINE-lab/salmon

License:

GPLv3

Recipe:

/salmon/meta.yaml

Links:

biotools: salmon, usegalaxy-eu: salmon, usegalaxy-eu: alevin, doi: 10.1038/nmeth.4197

package salmon

(downloads) docker_salmon

Versions:
1.9.0-01.8.0-11.8.0-01.7.0-11.7.0-01.6.0-01.5.2-01.5.1-01.5.0-0

1.9.0-01.8.0-11.8.0-01.7.0-11.7.0-01.6.0-01.5.2-01.5.1-01.5.0-01.4.0-11.4.0-01.3.0-01.2.1-01.2.0-01.1.0-01.0.0-00.15.0-00.14.2-10.14.2-00.14.1-20.14.1-10.14.1-00.14.0-10.14.0-00.13.1-00.13.0-20.13.0-10.12.0-10.11.3-20.11.3-10.11.2-00.11.1-00.11.0-00.10.2-30.10.2-10.10.1-10.10.0-10.9.1-10.9.1-00.9.0-00.8.2-10.8.2-00.8.1-00.8.0-00.7.2-30.7.2-20.6.0-20.6.0-10.6.0-00.5.1-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install salmon

and update with:

conda update salmon

or use the docker container:

docker pull quay.io/biocontainers/salmon:<tag>

(see salmon/tags for valid values for <tag>)

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