recipe sambamba

Tools for working with SAM/BAM data

Homepage:

https://github.com/biod/sambamba

Documentation:

https://lomereiter.github.io/sambamba/docs/sambamba-view.html

License:

GPL2 / GPL2

Recipe:

/sambamba/meta.yaml

Links:

doi: 10.1093/bioinformatics/btv098

package sambamba

Versions:

1.0-0,  0.8.2-2,  0.8.1-1,  0.8.1-0,  0.8.0-0,  0.7.1-3,  0.7.1-2,  0.7.1-1,  0.7.1-0, 

1.0-0,  0.8.2-2,  0.8.1-1,  0.8.1-0,  0.8.0-0,  0.7.1-3,  0.7.1-2,  0.7.1-1,  0.7.1-0,  0.7.0-1,  0.7.0-0,  0.6.9-0,  0.6.8-2,  0.6.8-1,  0.6.8-0,  0.6.6-2,  0.6.6-1,  0.6.6-0,  0.6.5-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.5.9-1,  0.5.9-0

Depends:

• bzip2 >=1.0.8,<2.0a0

• ldc >=1.28.1,<1.29.0a0

• libgcc-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• lz4-c >=1.9.3,<1.10.0a0

• xz >=5.2.6,<5.3.0a0

Required By:

• haystack_bio

• hafez

• harpy

• chanjo

• chipseq-greylist

• xyalign

• bioconvert

• lumpy-sv

• quantpi

• targqc

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install sambamba

and update with:

conda update sambamba

or use the docker container:

docker pull quay.io/biocontainers/sambamba:<tag>

(see sambamba/tags for valid values for <tag>)

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