recipe samblaster

A tool to mark duplicates and extract discordant and split reads from sam files.

Homepage

https://github.com/GregoryFaust/samblaster

License

MIT

Recipe

/samblaster/meta.yaml

package samblaster

(downloads) docker_samblaster

Versions

0.1.24-2, 0.1.24-1, 0.1.24-0, 0.1.23-0, 0.1.22-0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install samblaster

and update with:

conda update samblaster

or use the docker container:

docker pull quay.io/biocontainers/samblaster:<tag>

(see samblaster/tags for valid values for <tag>)