recipe samblaster

Mark duplicates in and extract discordant and split reads from SAM files.

Homepage:

https://github.com/GregoryFaust/samblaster

License:

MIT

Recipe:

/samblaster/meta.yaml

package samblaster

Versions:

0.1.26-4,  0.1.26-3,  0.1.26-2,  0.1.26-1,  0.1.26-0,  0.1.25-0,  0.1.24-3,  0.1.24-2,  0.1.24-1, 

0.1.26-4,  0.1.26-3,  0.1.26-2,  0.1.26-1,  0.1.26-0,  0.1.25-0,  0.1.24-3,  0.1.24-2,  0.1.24-1,  0.1.24-0,  0.1.23-0,  0.1.22-0,  0.1.20-4,  0.1.20-3,  0.1.20-2,  0.1.20-1,  0.1.20-0

Depends:

• libgcc-ng >=12

• libstdcxx-ng >=12

Required By:

• bwakit

• tepid

• lumpy-sv

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install samblaster

and update with:

conda update samblaster

or use the docker container:

docker pull quay.io/biocontainers/samblaster:<tag>

(see samblaster/tags for valid values for <tag>)

Download stats

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Render an badge with the following MarkDown:

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