recipe samtools

Tools for dealing with SAM, BAM and CRAM files

Homepage

https://github.com/samtools/samtools

License

MIT

Recipe

/samtools/meta.yaml

Links

biotools: samtools

package samtools

(downloads) docker_samtools

Versions

1.9-12, 1.9-11, 1.9-10, 1.9-9, 1.9-8, 1.9-7, 1.9-6, 1.9-5, 1.9-4, 1.9-3, 1.9-2, 1.9-1, 1.9-0, 1.8-5, 1.8-4, 1.8-3, 1.8-2, 1.7-2, 1.7-1, 1.7-0, 1.6-4, 1.6-3, 1.6-2, 1.6-1, 1.6-0, 1.5-2, 1.5-1, 1.5-0, 1.4.1-0, 1.4-0, 1.3.1-5, 1.3.1-4, 1.3.1-3, 1.3.1-2, 1.3.1-1, 1.3.1-0, 1.3-2, 1.3-1, 1.3-0, 1.2-2, 1.2-1, 1.2-0, 1.2.rglab-1, 1.2.rglab-0, 1.1-4, 1.1-3, 1.1-1, 1.1-0, 1.0-2, 1.0-1, 1.0-0, 0.1.19-6, 0.1.19-5, 0.1.19-4, 0.1.19-3, 0.1.19-2, 0.1.19-1, 0.1.19-0, 0.1.18-0, 0.1.17-0, 0.1.16-0, 0.1.15-1, 0.1.15-0, 0.1.14-2, 0.1.14-1, 0.1.14-0, 0.1.13-2, 0.1.13-1, 0.1.13-0, 0.1.12-3, 0.1.12-2, 0.1.12-1, 0.1.12-0

Depends
  • htslib >=1.9,<1.10.0a0

  • libgcc-ng >=7.3.0

  • ncurses >=6.1,<6.2.0a0

  • zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install samtools

and update with:

conda update samtools

or use the docker container:

docker pull quay.io/biocontainers/samtools:<tag>

(see samtools/tags for valid values for <tag>)