recipe samtools

Tools for dealing with SAM, BAM and CRAM files

Homepage

https://github.com/samtools/samtools

License

MIT

Recipe

/samtools/meta.yaml

Links

biotools: samtools, usegalaxy-eu: samtools_flagstat

package samtools

(downloads) docker_samtools

Versions
1.11-01.10-31.10-21.10-11.10-01.9-121.9-111.9-101.9-9

1.11-01.10-31.10-21.10-11.10-01.9-121.9-111.9-101.9-91.9-81.9-71.9-61.9-51.9-41.9-31.9-21.9-11.9-01.8-51.8-41.8-31.8-21.7-21.7-11.7-01.6-61.6-51.6-41.6-31.6-21.6-11.6-01.5-21.5-11.5-01.4.1-01.4-01.3.1-71.3.1-61.3.1-51.3.1-41.3.1-31.3.1-21.3.1-11.3.1-01.3-41.3-31.3-21.3-11.3-01.2-21.2-11.2-01.2.rglab-11.2.rglab-01.1-51.1-41.1-31.1-11.1-01.0-21.0-11.0-00.1.19-80.1.19-70.1.19-60.1.19-50.1.19-40.1.19-30.1.19-20.1.19-10.1.19-00.1.18-00.1.17-00.1.16-00.1.15-10.1.15-00.1.14-20.1.14-10.1.14-00.1.13-20.1.13-10.1.13-00.1.12-30.1.12-20.1.12-10.1.12-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install samtools

and update with:

conda update samtools

or use the docker container:

docker pull quay.io/biocontainers/samtools:<tag>

(see samtools/tags for valid values for <tag>)