recipe sat-bsa

Sat-BSA is a package used for applying local de novo assembly and identifying the structural variants in the assembled region

Homepage:

https://github.com/SegawaTenta/Sat-BSA

License:

GPL / GPL-3.0-or-later

Recipe:

/sat-bsa/meta.yaml

Links:

biotools: sta-bsa

package sat-bsa

versions:

1.12-1,  1.12-0,  1.10-0

depends minimap2:

2.17.*

depends openjdk:

depends perl:

depends python:

depends r-base:

depends samtools:

1.9.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sat-bsa

and update with::

   mamba update sat-bsa

To create a new environment, run:

mamba create --name myenvname sat-bsa

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sat-bsa:<tag>

(see `sat-bsa/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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