recipe savage

SAVAGE (Strain Aware VirAl GEnome assembly) reconstructs individual (viral) haplotypes from a mixed sample.

Homepage

https://bitbucket.org/jbaaijens/savage

License

GPL v3

Recipe

/savage/meta.yaml

package savage

(downloads) docker_savage

Versions

0.4.1-0, 0.4.0-2, 0.4.0-1, 0.4.0-0, 0.3.0-0, 0.2.1-1, 0.2.1-0

Depends boost

>=1.68.0,<1.68.1.0a0

Depends bwa

Depends kallisto

>=0.43.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends python

>=2.7,<2.8.0a0

Depends rust-overlaps

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install savage

and update with:

conda update savage

or use the docker container:

docker pull quay.io/biocontainers/savage:<tag>

(see savage/tags for valid values for <tag>)