recipe scvi

Single-cell Variational Inference

Homepage

https://github.com/YosefLab/scVI

Documentation

https://scvi.readthedocs.io

License

MIT / MIT License

Recipe

/scvi/meta.yaml

Single-cell Variational Inference

package scvi

Versions

0.6.8-0,  0.6.7-0,  0.6.5-0,  0.6.4-0,  0.6.3-1,  0.6.3-0,  0.6.1-0,  0.6.0-0,  0.5.0-0, 

0.6.8-0,  0.6.7-0,  0.6.5-0,  0.6.4-0,  0.6.3-1,  0.6.3-0,  0.6.1-0,  0.6.0-0,  0.5.0-0,  0.4.1-1,  0.4.1-0,  0.3.0-1,  0.3.0-0,  0.2.4-0,  0.2.3-0,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.6-0,  0.1.5-0,  0.1.4-0,  0.1.3-0,  0.1.2-0

Depends

• anndata >=0.7

• h5py >=2.9.0

• hyperopt 0.1.2

• matplotlib-base >=3.0.3

• numpy >=1.16.2

• pandas >=0.25

• python >=3.6

• pytorch >=1.1

• scanpy >=1.4.6

• scikit-learn >=0.20.3

• tqdm >=4.31.1

• xlrd >=1.2.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install scvi

and update with:

conda update scvi

or use the docker container:

docker pull quay.io/biocontainers/scvi:<tag>

(see scvi/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/scvi/README.html)