recipe selam

Simulation of Epistasis Local adaptation, with Ancestry and Mate choice

Homepage:

https://github.com/russcd/SELAM/

License:

GPL3

Recipe:

/selam/meta.yaml

Links:

doi: 10.1093/bioinformatics/btw365

SELAM (Simulation of Epistasis, Local adaptation with Admixture and Mate choice) is a forward time population genetic simulation for studying admixture between ancestral subpopulations. This program tracks local ancestry along chromosomes. SELAM supports complex demography scenarios, including changes in population sizes, migration rates, and arbitrary numbers of subpopulations. This program can also accommodate sophisticated selective regimes, including dominance, epistasis, local adaptation, and mate choice.

package selam

(downloads) docker_selam

versions:

0.9-3,  0.9-2,  0.9-1,  0.9-0

depends gsl:

>=2.7,<2.8.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install selam

and update with::

   mamba update selam

To create a new environment, run:

mamba create --name myenvname selam

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/selam:<tag>

(see `selam/tags`_ for valid values for ``<tag>``)

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Link to this page

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