recipe seroba

SeroBA is a k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references.

Homepage:https://github.com/sanger-pathogens/seroba
License:GPL / GPL3.0
Recipe:/seroba/meta.yaml

SeroBA is a k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references. You can use SeroBA to download references from (https://github.com/phe-bioinformatics/PneumoCaT) to do identify the capsular type of Streptococcus pneumoniae.

package seroba

(downloads) docker_seroba

Versions:

1.0.0-1, 1.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install seroba

and update with:

conda update seroba

or use the docker container:

docker pull quay.io/biocontainers/seroba:<tag>

(see seroba/tags for valid values for <tag>)